NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_001620

Scaffold Ga0334790_001620


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_001620 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18651
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005983Metagenome / Metatranscriptome384Y
F006433Metagenome / Metatranscriptome373Y
F007657Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_001620_4571_4774F006433N/AMTDAIYRIVHRQDDSFAVEIARSGALAQTAAGFTTEAEARNWIAQDKRLWDAVDPFRAQAGRRWRGG
Ga0334790_001620_6018_6278F005983N/AVPNHRQVTTRKQETIMQADADYVGQISYDYDEFCKDYGHPAGRMFTFEVTHRAITYVYADVIGQVEGDEVVFSLDASDLVQTRKAH
Ga0334790_001620_6391_6594F007657N/AMNWVTFQTVDGGLVVVQLRHIVAIYDEQGQVKLATAAGGEHVLKDMTVQRAAARVAAVVEADVAAAG
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