NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_006732

Scaffold Ga0334790_006732


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_006732 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6780
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004066Metagenome / Metatranscriptome455Y
F007046Metagenome / Metatranscriptome359Y
F069206Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_006732_4765_5055F007046N/AVLITIEGGAESRTCEGETIVVNLHGALIATAIGLSSGMGISIHVYLTDKRAAARVVYIDPKNPLHCGIELDEPRNIWGVPLTPDDWEETAALKTGH
Ga0334790_006732_5366_5578F069206N/AMEFFQLHHPPDVTVLCDRKGCEEVADYLEVDDHGHEYRVCASHTDSKTHASRLPTRKPSPDLPFRSRPAA
Ga0334790_006732_6474_6779F004066AGGMDETLRAKLDEARERINSKQTGINANRKHDDPAMREWARGKQRPANAERAQFRHSLTDEDRNQIEERIQQLIDDNPALSSTNAQTLDSKTEPPSVSVQVLNE
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