NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_091132

Scaffold Ga0334790_091132


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_091132 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1009
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001432Metagenome / Metatranscriptome696Y
F015005Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_091132_3_650F015005GAGLCSGAGKLKRTEVLDRLGVKDFARVAQLSAEEAFRLLQNKHNHEHESAWARFETELAKRTAEIRERHKDELRITQSERDAVTRRVEDCLREVAQLQVRNQQLEAEMSKVARIGKREEMDFADEARTWAGICVSEKLPRNGDFILAYRDPSGAPLEPLMLIDCKDKSAITEADMTKLVRDSKERSIPVAILVARDESQLRQVDKDQRWDRTDGIWIL
Ga0334790_091132_771_983F001432N/AMLKKDYVRDGNRKIIGSVTTGFSDTSAVERDGSNGITGRTNERFHTTRDGHGNLVSINSSDPGLLIGRTK
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