Basic Information | |
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Taxon OID | 3300033888 Open in IMG/M |
Scaffold ID | Ga0334792_008535 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4223 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3534 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002004 | Metagenome / Metatranscriptome | 605 | Y |
F006559 | Metagenome / Metatranscriptome | 370 | Y |
F014080 | Metagenome / Metatranscriptome | 266 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0334792_008535_1950_2156 | F014080 | N/A | MGTVQEGGDRLRFVTDQRVWNVDNPEILEGHEGHYVHATAYVYPDNNSIHITEVKIPTASETKIDDMK |
Ga0334792_008535_3165_3389 | F002004 | GGTGG | MKKIPNSSRHLSEHILRALNKIRKPSTAGEITELLNRDLDLEDRPFQAKDVAEWLRNTDDTALTLYWPRARPRK |
Ga0334792_008535_3972_4136 | F006559 | AGTAGG | MISSAGQPEEQPDLKKPTALRGAVGVWDRESGDRIKGCDGACLHAFGSLAGAGG |
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