NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334792_014162

Scaffold Ga0334792_014162


Overview

Basic Information
Taxon OID3300033888 Open in IMG/M
Scaffold IDGa0334792_014162 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3018
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069205Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334792_014162_2_814F069205GGAGMSIRAPRLALFILFVVVSTFSQSAPKVAPLPYDPLELATGPTVVPDTPEKRAVLLNLLERARQNSAMHTPGMAPFSIKVSFNSTGGDSHSQGYGELEETWLNGQTWLWSARLGDYSQLRIFYEGVAYDDKPRGHMPLRLQMVRNSVFWPVVGNFAPALIRMATAKWEGTEVACILMSRGSNDATDMPGRRWEENEFCIDPKTGLLRIHSEAPGIYSVYDYNGGIQFHGRVLPRQTTIVEGGTSVLQIHLDDIQDANPDPNQFVPTKKMISH
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