NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334810_171828

Scaffold Ga0334810_171828


Overview

Basic Information
Taxon OID3300033890 Open in IMG/M
Scaffold IDGa0334810_171828 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0468Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010139Metagenome / Metatranscriptome308Y
F025426Metagenome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0334810_171828_194_523F025426N/AMPPGSIMIAWQGTGPGRLGNALVFVHDFSLYLRAPEEADVGYEDLFNWIVNDVPAGSSLRMLHTPVDPNCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESYNP
Ga0334810_171828_3_179F010139GGAMEMADLIHMASPEGEVREVEATAEALSPLMSTGWIQVPAPVGQKPVATAQEGTAHGQH

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