Scaffold Ga0326767_000046

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326767_000046

Scaffold Ga0326767_000046

Overview

Basic Information
Taxon OID	3300033892 Open in IMG/M
Scaffold ID	Ga0326767_000046 Open in IMG/M
Source Dataset Name	Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	59051
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (44.05%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.7535	Long. (^o)	-110.7249	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076261	Metagenome	118	Y
F101502	Metagenome	102	N
F105516	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326767_000046_10733_11137	F076261	AGG	MIGGVAFQLGNATGSSQIVSSAVAYFAPVFNAIMAFLGVAFWASLIFLVYYGIEAYIHPTPFGRSARLASMYDHAKGIIWSIITIYLVLAIIAFAVNQASAAAGAGTSVSVGQLFYYVFVKPVVTGFKVLFSSI
Ga0326767_000046_30140_30463	F101502	GAGG	MSQVSKAPIIAFTVILALGLGIVVIGASEPMKPGVGAVIVLLASVASALAYIWLRHPGLLITIELGVGVFLVIIIVNWLHGISPLTSLRWYYNALRTLITPLARLKP
Ga0326767_000046_30515_30910	F105516	AGG	MPKAVVRVLALGRVSLNFKTFRVIENERLSITDDGTVKCLGGGCSANGVFITLEADRPNARELYDALKKVRVLELEVEIHDLPKWLLSRLEFLTGAISGDAKVKYTWRSMPSFEELALVLNDLNLNGVNPY

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