NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326767_000311

Scaffold Ga0326767_000311


Overview

Basic Information
Taxon OID3300033892 Open in IMG/M
Scaffold IDGa0326767_000311 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15055
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (51.85%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038746Metagenome165Y
F070689Metagenome123N
F103565Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0326767_000311_162_434F038746GGAMVIRTPKDLEEIRNNIDKYKSELKDGELIEIQIAKSGKYMLKMSLSKEGVKFEISGEDKKQALIMQNKDDAVALQKLIQILLAIAFNKPN
Ga0326767_000311_1698_2012F070689GGTGGMTLEVNYNVYRRIIQFAKTSDKPIPILRYKLPDGISKGDVIKIRSVQMASRTKTLIAEVVDIKEYDVNRDDIPYDELKPIYENYINVIPKLGQVVIVYVKPINF
Ga0326767_000311_3548_3841F103565N/AVSDTIINAVMYAREIAKRLLEKEKFKGYKAICKVPNYSTNNTPTYVLLRLKNKIGIPIAVGDDVKRLFEVSPYVKVIVVPALTTAVKTPEEALALLA
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