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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033892 Open in IMG/M |
| Scaffold ID | Ga0326767_000763 Open in IMG/M |
| Source Dataset Name | Hot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7676 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (6.25%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → Candidatus Nanoarchaeia → Nanoarchaeales → Nanopusillaceae → Candidatus Nanobsidianus → Candidatus Nanobsidianus stetteri | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.7535 | Long. (o) | -110.7249 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F090626 | Metagenome / Metatranscriptome | 108 | Y |
| F097670 | Metagenome / Metatranscriptome | 104 | Y |
| F099549 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326767_000763_2953_3369 | F099549 | N/A | MDENLQYAYQIPDLKTRFQIGFGNIIEQIIELLTYSDISADTKTFDNEELKNKLRAAISYAMGLLASTWGYSLSEKTQADILKVKESLKALFDTIITNTELTYPNLLDIYFTLIQQVSIILNYGTPIPQPRTGNYEIT |
| Ga0326767_000763_4329_4838 | F097670 | N/A | MNYKVFDKDIYTETDKIITINLKTSEINYEAKVYFYDGKELKEINDLQEYNLKLYEISQKIQEEFTKFSSKHAKPPFGYIAIGNIIYEFMLNRNNVILIAYADIIKVENEVSKEISNDIIKIIVKSKTIFNKEWNFESTQNLSPEVKDNVTKIIEKALKSAKMLIKKNI |
| Ga0326767_000763_7177_7671 | F090626 | N/A | MSRIFKFANIYFGKNSLVKLFANKTHLETHTDYDGTALAFLLDVSDFTNQNALLSHFAIINGNEIRPILIEWNLRTIYSRLLILLNQLPGPHNTKMLLKRFESIIENQRPETIKYIAGQYARTLTDAKGLQPIYSFLVQRIQQLKLIGIKKSEEEVRRLAMIYR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |