NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326767_002539

Scaffold Ga0326767_002539


Overview

Basic Information
Taxon OID3300033892 Open in IMG/M
Scaffold IDGa0326767_002539 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3433
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Saccharolobus shibatae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0326767_002539_2503_2943F011097GGAGGMIRDVPLYTSGGTDPFTGLPVGGSPITGNGSNYQLLRFHPNYARLLILITGLSGTSPSIQFTIGSTVGSNLYTLPPITSPIYIYVIGNENKTIITYLNTNWQVLQQVELPYNIFLNGVYVSWSVAGTSPSITTYIHFEFEDEEEGE
Ga0326767_002539_2945_3385F030159AGGLVTVPSLIFGQTSPGGSYYVIAGANGFNSIYHGVVAHTFGKKYARVYLNINAGNGAFVNIYTRYRSRTAPDLQQMYGNSPNPNNTATYYPSVERNFGTLVYATDYSYNMPYATDYSRTSKFRVDDQVLWVLTRDGYGPVWVELEGD
Ga0326767_002539_331_879F021133N/AMAKRDDLIRQIYENGNFVIKKICEMEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCKLHIGKPPKPYDFIVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIIELQKEYITNIFKLK
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