NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326767_005240

Scaffold Ga0326767_005240


Overview

Basic Information
Taxon OID3300033892 Open in IMG/M
Scaffold IDGa0326767_005240 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2122
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099548Metagenome103Y
F101501Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0326767_005240_1065_1511F101501N/AMDTIEEVLKGSIGTIKSIVRSVFNGEYIGYRLDPIPFIIIRIGDNLTEVPITAFKPILEKAYRVLEDYEKAMLLAYEAGGIFKVQPYIIQLLILDAIQLSQLLGIRTANTLVRTLLEHPLSRERATLLGRRGVEWLVRAMINVGLLNM
Ga0326767_005240_202_534F099548N/AMIDLKHAIARVIVILIKGAPGDCVSITPSLLGNMTGDGAVREALRLLRVLHIQGILDRGYGAYTLCLEDNPQLWAIAKRLPIDEAVAWLMWLIEDALDGKPINTGPSYEL
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