NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326767_010664

Scaffold Ga0326767_010664


Overview

Basic Information
Taxon OID3300033892 Open in IMG/M
Scaffold IDGa0326767_010664 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSE_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1282
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052042Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0326767_010664_68_1282F052042GAGVNWADNVFTAAGYTPSSPGVINVPNNGSFVYVPNYGYVNYFENPSTITLNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPSNDKPYFLGGLKFDSTIEQTIGNALSPYPWGNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPVYMTPYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITTYGYAFPAFGANNLPENLQTCPSSYGGYSYYCIPILGFAGLLDTFDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDWGGISSMRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVT
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