NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326769_004928

Scaffold Ga0326769_004928


Overview

Basic Information
Taxon OID3300033894 Open in IMG/M
Scaffold IDGa0326769_004928 Open in IMG/M
Source Dataset NameHot spring water microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_P
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3809
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring Water → Hot Spring Microbial Communities From Different Geyser Basins In Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.7535Long. (o)-110.7249Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018544Metagenome / Metatranscriptome234Y
F061872Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0326769_004928_1_366F018544N/AMIDMTTHVQIGGTELKVRIEKALNEKSLKKLITNLEKELNGEHSFLPHDVEAQIRREIADAGVAVSQHGGWYRCIAAYLLLPKLDELLAVKSTAGEQNVAPIVQKLRNEALRESLGAFGIEL
Ga0326769_004928_513_950F061872N/AMKAAQNSVFKVEWGLPEIAPKYRKELAEIVNAYWVDQSNRDEYRQQASKVFINACKSNYVKFPKEAVIGGSTASIARATELDRRIITKATSCPEQVIFYEYMPYYIVSLGDDVYITDRIDDFSQPYLRVDLPKAVRAHSLVLTLF
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