NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000003

Scaffold Ga0314861_0000003


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000003 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522705
Total Scaffold Genes480 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)307 (63.96%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000157Metagenome / Metatranscriptome1872Y
F000508Metagenome / Metatranscriptome1069Y
F000534Metagenome / Metatranscriptome1044Y
F000969Metagenome / Metatranscriptome818Y
F001318Metagenome / Metatranscriptome724Y
F001364Metagenome / Metatranscriptome713Y
F002981Metagenome / Metatranscriptome516Y
F003445Metagenome / Metatranscriptome486Y
F003708Metagenome / Metatranscriptome473Y
F003854Metagenome / Metatranscriptome465Y
F004969Metagenome / Metatranscriptome417Y
F005420Metagenome / Metatranscriptome401Y
F007325Metagenome / Metatranscriptome353Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000003_122941_123474F001318N/AMDLVADSASGSWHEAEPGERMFFPRDMFWGWAQLDLAPPHNEVDPNLCAGNAGQYGGANAPCSMFARYMLSGILEVRPFGRTLLRRFMVFGAPTFLFGKNVPKTLYTWSPDAIGVEHSWGAGIYITKGFEFRVTQHFLFDRLGARDTNLGTADLGNNGPWGRYMTVGVRKMFGTRRW
Ga0314861_0000003_124010_124351F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKNEAEVQESIRRWWSLIHPADRPIAQKYLLMVLGRSTSALDAVEDALFSVGSSDAAHSQLAVSQLAGRRMRLMERIVKESGIRPAV
Ga0314861_0000003_13606_13740F003854AGGAGGMLATRHRFNRNPYFHFHPWHTLFSLVGALLLFGLLVWFLAIPAR
Ga0314861_0000003_157955_158419F000157GAGGMPADDLASLLSRVVETKAEYDVRLLAQQLGTNYRSLMYWLRGERRIPAHVLPHMCVLLNNYEALDFLERQAGRVAFRLPSPDAKLEEELAAISNLIKEVGEALESVGETLADGIVEESELKVTIPKLEAVIRECASLKYLLEDLCKKRKKKKAT
Ga0314861_0000003_264105_264329F000508AGGGGGMTNLNKVVTSLRNEYSRLEKEMGRVGKALNALGHANANKLKRKKRVLSKEARRRIAEAQRLRWAKVRKAKLVKS
Ga0314861_0000003_372400_372933F005420AGGCGGMKRSAVFLGLVLLSVTHTHAQATQPALYAESFRKGTTRITEESFEAKLTPQNATYRELLKDSAGNDRYELTITPQGPEGDDKITSWRVKLRDLHHSIYSNLLLAEQQPSTEARNNLWWLNPNPFGPVPIRAKRIMKVDSFFIVFQVKDLHFTPLDSPYLDSMAVQFAVTNSDPRTGH
Ga0314861_0000003_41112_41534F007325N/AMTVAAAILSASAALGSEPTIEELKARLSSTSFGDRPHLCVQIAEKQLAEVDRLFAAAEIEKAQAALTDVVAFSELARDYAIQSHKHEKQTEIAVRGMIRKLTDIMHSLAHDDQAPVRDAINRLQHVRDDLFAAMFPKGAK
Ga0314861_0000003_451960_452193F003445GGAGGMAFPNDDPTVQRGDRTIQLIDWLVGRLEECLGEVLPLQTDDLVKDYAKDARDSMASAIEQLSLARAKKEQQLGGRTG
Ga0314861_0000003_457589_458197F002981GAGGMSDETPSTSVQSSQPPPSSATQPAAQPGPTINIGEEYGTAKKNLPPARIVLIAVAGVLIVVLIASFLKRAKPQAAGSLDNVNAVEIPGQGSTMVALTFTLTNTSDKILYVHSLQGKIKMASGESSADAVSAIDFDRYFQLFPALKSGVQPALTPETKIQPGEKVTRSIIVAFPITLDQFNQRQSTSVVIWPYDQQVPVVLTK
Ga0314861_0000003_487501_487752F000969GAGGMANDDVVKCPLCGGFTQIENKELLAALKEPRLREQIEQYIAKLLKSPVDELSTVGATQAGRDFQKDVHTWNPCVPMWRRSPKE
Ga0314861_0000003_56601_56873F004969AGGAGMSRGSHTLSSLLLGLALASSLAGIACAQHHYYRVYDPYYTDYHVWNDEEIVYYQRWCGETHRDPHRDFRKLSEEEKKEYWTWRHNHGDHR
Ga0314861_0000003_63525_63674F001364AGGAGGMLGGLLFIVCVILQFHYHDSIPWYIWVLAFIAQLAALGEPAMRAAAKRN
Ga0314861_0000003_87382_88080F003708GGAGMKAAVLVILAAMLFATASAPPPTARAMPPLTESTEQNSEPFSSPMFETVIEPGSSIGPLKLGDSRERARELFPKKDEDQEWEDRCGSALYWVDSTNRVGRGDLTIRLKKDRIFQIESSTTRFHTAEGITTFDLPEKVKSAYKDLLAYTLLTPPNAALGDRPLIFWLDKKTGIAFVFAYYPAKQQRYLYKTIVFVPNKAFCPEGEATDSPKWQEIPPYSLELPSELALNHPRN
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