Scaffold Ga0314861

Basic Information
Taxon OID	3300033977 Open in IMG/M
Scaffold ID	Ga0314861_0000080 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033977 Open in IMG/M

Scaffold ID

Ga0314861_0000080 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	157235
Total Scaffold Genes	151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (68.21%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

157235

Total Scaffold Genes

151 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

103 (68.21%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Peru: Loreto
Coordinates	Lat. (^o)	-4.0712	Long. (^o)	-73.2029	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Peru: Loreto

Coordinates

Lat. (^o)

-4.0712

Long. (^o)

-73.2029

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F027079	Metagenome / Metatranscriptome	195	Y
F028392	Metagenome	191	Y
F057060	Metagenome	136	Y
F076771	Metagenome	117	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0314861_0000080_131578_132036	F076771	AGGA	MYSVNQSSLVSAYGSFFGSWPWDHYATLTFARQLSESTCIRHWDEFINSLGRLTHGRVAWVRADERRSSGYASPEIPLHYHALLKYQHVPAPEDVAALWKSRAGDAKVEAYDSGGGAAWYMAKMFPYEDTRYDMGGLEHFARILEPQCSSVQ
Ga0314861_0000080_42546_45662	F057060	AGGAGG	MANHGELYFTPDLTKPHQKWSVLEDPERPGRKLIYRHYRQPGEKPDVRTSFGHSELSSVLEHYAAKAGIEYSRLSLGRQTDSFGLALDLVQSGLGLEVPGDGVWFPVVPWVRDEGFCAVLMREPIPFEEACHLFGFEIPAAKPSVPKRIKRHLARGRTTLFGREAEVRQLNEYDHVHRVILADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKAHCLIWDVAYDLIVFDIKQELRAWNGQAYFSVLNELHSSPANLDVQTASNLDLAKVRDQKLIQYLGQEFACDVFELMKDDERVKEEIGFYNPNGWVDEEGNLVMNENRWKLWRMYAAGLPAMRFRHCRDAFYRTQMESPQNSDPDRFRIHFREPKDLMTVQPQELAGAAVRKYLFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGHRLQQFADIDRGAVMFVHLGFAASPEGTPGLGKSFNGADFDDSVLALLDPEIVAHWKTLQDYPQVVAAPTQVMVIDDGDALFDRHPDIERYDDEFVMRMIIDARDGQMGIGCVVNAIVWFNLLWLNRESILAQLRAMIPSPKVLEAIRWIEHDLPQSQMPMIASRLEEIIDSIKMNGKSVEWANGAITEFRNTCPVAPKFWWQGGFQGQGRIPRHRLGNGNEPIAVTTAMDVAREEWVEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWLLYNRTREAKKTEFLKAGKDHRGKSVTTEQEASLAAYLFAEEDAHNRIKASGMYLEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMAKAAGVTRRYVPITWESGRAHADYGHLNLDVVVEDTLVRMVGSTPNPANWLGIVDVPDGQYRLEHGLVATEDDGEAPPQAATVALPAVNGFEQRLKDITLKQHDRQKIEAELKLFQAQIGQRVTVKPVTYHNPKTRQDEPAAQVFLEGKSEPLCWISREHLSAVTRELRGVLVSNGKYTLKAVCTLPD
Ga0314861_0000080_45855_46265	F028392	AGGAGG	MAKSIAAFHLPEALRDGNSALVKLAGKIDSFSLVLQRTPECQLKRQIEKEYHAMVFTTRKEVRKYCPKYRYFVGDGILDFSTDCASGQLEPGDLGKPPQPKRGRLCQECCFFLGEPEEQVSETTISGVPKDLAPLV
Ga0314861_0000080_46426_46884	F003859	AGGAG	MDELNAQKGTRAKDVIASDYSLPGASLYKSLKLGWQWRRLRWAVAAASEAAQGHEANGVRPGSQEFKTLYDEVAKKVQEYSNESGDPIDTLKAKLPALCAIERLANPNPVMPQNKLGLTLGIILAAVLGSVGIGALIGLGAGMAHWIAHLFA
Ga0314861_0000080_46896_47228	F016632	AGGAGG	LTGILELFALIEISSAIGFLASWRNKVLTAKVNFFRPPDNRPSPFDKVLQGKVGRALTRQDRLRLKIADRLVNLIRKLVQYEAFRQLVRGLALAHSPMRQALRKKGGRPW
Ga0314861_0000080_47225_47419	F027079	AGGAGG	VIKAFLNLCLILFLNTLAFMVVIVAATAVAWAAICGARWIFAGFQNAVMALRARRPERDVRAPG
Ga0314861_0000080_48953_49348	F005112	AGGAG	MSLAAKYKLFWAACIATLCGVAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLLLLYAPALLLVYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMERRNRKELAKAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0314861_0000080

Overview

Ecosystem & Geography

Associated Families

Sequences