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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000089 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 149085 |
| Total Scaffold Genes | 126 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 81 (64.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000515 | Metagenome / Metatranscriptome | 1062 | Y |
| F001632 | Metagenome / Metatranscriptome | 660 | Y |
| F027291 | Metagenome / Metatranscriptome | 195 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000089_105693_106754 | F001632 | AGGAG | MFANPWKWVMPAILFVAVPAFGQNQADQLAYCSYVMEQAEAQRDFLRTPVAFGGFTQPETGLPMQLVGGASLGLSAFRRAGLTMAVARKNCELYKATAAAQQDVQYAMANLEREALRNRLTLIDQASQSLTAMMEKTAKMVEAQNATRLMLFNLQTTKIKLDADRADTASKLGAIYVPSLSDKPLKELVTEKQNGEANEQRALDKLNRQNNWDVALSVGVHQQINPVAYGAQPYGAVSANYNLSSHWINKHLDRAVSHYDDWKKVQEGDVVRNSEVLHQQLLDNVAAQEGKLKSLQEQSSEIDRNLRAIGEPDTSAAFDFHNQLTAAQLLLQVETGDAIFRLERLRAYLAKNY |
| Ga0314861_0000089_35772_36158 | F000515 | N/A | MTHFPQPHPSRRAARVQLGDSVLAAIRLEDGRRTKGKLQTISVTGGLLRLAQSLAQGDFVEVAFQTQAGPVHGMAELLSPMRKMDDCVLQPFRFVALEDDDHRRLRTSVDHVAERSLLGLRSSAFSTY |
| Ga0314861_0000089_54058_54543 | F027291 | AGG | MILLITPSARGQQCAGALQAATGEETRWAQNLQQAATLLREQTYSAAVIDQFVLETEPQESEQMLEHLGTAFPVYINFAVTGMERLVRETRSALHRRQREESAAKRAVKQQMRSEMCETLTAMLLSCELAMSVPDVPVPAAEKIRAIDSLARELRLRLQVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |