NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0000376

Scaffold Ga0314861_0000376


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0000376 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73624
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004817Metagenome422Y
F008540Metagenome331Y
F011572Metagenome / Metatranscriptome289Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0000376_5604_5954F004817GGALVKLAGKIDSFSLLLRDTPEGELKRSIEAQFHSMVFATRKEIRKYCPRYRYLPGEGILDFNTDCTSGQLEPSDLGQAPPPKRGRLCEKCCFFAGIPEEQLPETTVSAVSRDLVLVA
Ga0314861_0000376_6115_6324F008540GGALIARETREENRRELAKMLDQISKGRASRLPAPPPVSLEAQFKMSIHRIREDVQRAKDVQTARILRWLQS
Ga0314861_0000376_6411_6653F011572GAGMGFLGEHMDTNRMFTSLFGGWLTAADKAAAATINCVKSTVMPTFSELTQKATLATGKTLVEAGNKLIDCRTRKSPLSHPR
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