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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033977 Open in IMG/M |
| Scaffold ID | Ga0314861_0000545 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58851 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (72.22%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Peru: Loreto | |||||||
| Coordinates | Lat. (o) | -4.0712 | Long. (o) | -73.2029 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000275 | Metagenome / Metatranscriptome | 1391 | Y |
| F005269 | Metagenome / Metatranscriptome | 406 | Y |
| F012173 | Metagenome / Metatranscriptome | 283 | Y |
| F013438 | Metagenome / Metatranscriptome | 271 | Y |
| F088100 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0314861_0000545_16974_17333 | F000275 | GGAG | MTAENRLSAPKRRTRAEVQQLVAEFVSSGMRRSEFCQSRGLSFSTLDRHLKKWRWKKRRRPISSAGRLVPVELAARKSPKQHEPSCGLAVVLPGGRRIEVHPDFDMSTFERLVGILERA |
| Ga0314861_0000545_22319_22561 | F013438 | GAGG | MNRLYQWLSRRARVFRSGRFGQGTNRTVRTEVTVQRDAVALLVGDAAVVGFDACPLCGSKLAPEQAEQARLRLPKGPLSA |
| Ga0314861_0000545_56636_57061 | F088100 | AGGAGG | MSAAVVTAIDTQSNDSTAAIRRYQDGYRVADGVVTFGQTVKLGGIFVGGVIFVAGLVEFILNPAEHHGFAVIFASLIACAVLLILISQALAMGLCGEGHLLKAALDSDVNSSPFLSNTQRAQAMSLRERPPVPTLLPVWTE |
| Ga0314861_0000545_6265_6867 | F012173 | N/A | MTAPLPPTLPLSAPIPGAVKKKRVLLVDTSQRKRELRAEVMRKLGMDVDCAADVAEARIWWRAALYDLVLINMGKGHDYRDKFCDDIRSATPPQRLAFLVGQPKYLADSPNADNETPVENADNGVAGDLKVAASADRGDLTQRWGILEASRRISAVRSASIARTQAMRALPAPPRDSEGRPSKPTSTPTSLDDLLREEMR |
| Ga0314861_0000545_7881_8270 | F005269 | GAG | MSPEIAFSASCSIRLQAPNGLSLTGNDLTASYAIIRHNIRTYQSAGVLAVVRGKQRAESELKKFQDSQDSTDRHEGWRYFIEKTDLPAGTDPVEATRRRQAELEGRESKALRETKTPNFLSPDPRRGDR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |