NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0004727

Scaffold Ga0314861_0004727


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0004727 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11796
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F011927Metagenome / Metatranscriptome285Y
F014038Metagenome / Metatranscriptome266Y
F016073Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0004727_2478_2720F011927AGGAGMKRREGYKGYVIVARSHELRDGGFSAEFSIEEHDADGVLETEFYLPDTFPTQQSAIDAGIQAGRQKIDAGFERRSTRASA
Ga0314861_0004727_2988_3179F000175N/AVDEARKRVIGVMAAILAARKLAQYDGGRRVPATVAAISDAVRWAEEIMKAIDERFPVAKTTPR
Ga0314861_0004727_4530_4856F014038GAGMKVTQDAALSLLNKYVEERTPVFAALVTPSVSVVRVTGRIRISIADGVPRLVIGEDDNESDQIKFRLSNCVFEYGDFRGEEPYSHKWEGFLVVGSSRGDTLSLFEPKS
Ga0314861_0004727_5727_5951F016073GAGMDDCSIGGKAEKLRQEIEVILLEERRYRSLKGHSLGENADHDKRQFRILAIREELRTLLEKARQQSSHGSVWYS
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