NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314861_0064799

Scaffold Ga0314861_0064799


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0064799 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1965
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F010071Metagenome / Metatranscriptome308Y
F025427Metagenome / Metatranscriptome201Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0064799_1107_1295F007120AGGAGGMKKLIIVVSVACAVVAYYFGLRYFSGQDLGFTRASKYVRNLAKTLLHTEATAAQEAGAAPTA
Ga0314861_0064799_1359_1682F002761AGGAMTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRESALRWINAHKVIALTATEVVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSKLEGL
Ga0314861_0064799_1679_1963F025427N/ALEKLLVSLETCPIQKKGLVLRLLKLYWKKLLFIALMLVLPGGLIALFLCVTVWALNWEKEMTAYFDATFRKWKKDNDVQCDFDGWLDEKGNDRV
Ga0314861_0064799_3_479F010071GAGGMNRLANLALSVGETLLHESRRLLFGIALGAAKQFLGTPQPLGRGQLVLPRALQKKTVDGALLAGTRTEKEYAKFALKKGLPTEERPRALAVENAPHSVDDFSGIIKDGYGKGQKKLIYSGTGVIKVRGSCQLGKINVHAHEAEKAGLHYDFVAEGVDPH
Ga0314861_0064799_533_928F005112AGGAGMSLVVKYKLFWAACVAALCGLAFWKNSKSYPGRSRLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRNRKEVAKPA
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