NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314861_0149864

Scaffold Ga0314861_0149864


Overview

Basic Information
Taxon OID3300033977 Open in IMG/M
Scaffold IDGa0314861_0149864 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NamePeru: Loreto
CoordinatesLat. (o)-4.0712Long. (o)-73.2029Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F020126Metagenome225Y
F039911Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0314861_0149864_129_317F039911AGGAGMKYTIAVLLTVAAAAAGYFGLRRLTNKDLGFTPVKRYASKLAKTLIHTETTAAQEAGTAPTA
Ga0314861_0149864_496_891F005112AGGAGMSLSVKYKLFWAACIATLCGLAFWKNSKSYPSKPRLWRLGKSAIDTGLVLLLVLYAPALLLVYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLVTGQVVARMERRNRKEVAKAA
Ga0314861_0149864_956_1138F020126GAGGMNRLTNLAFSVGETVFHEAGRLLFGIALGAAKQLLGTPQPLGTGDLALRRALQRKTVDGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.