NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0000685

Scaffold Ga0334977_0000685


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0000685 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19907
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (24.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F016000Metagenome / Metatranscriptome250Y
F093870Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0000685_15108_15497F016000N/AMTSKEFVLWLKGFTDGVHEFNITPKQWDTLKDKLAEVKDEEPIGFPFGTPNTQPFPTWQHPHYIDPYNPYKITCGSGSSGTITTTPNVGGSITIANPPFGFGSTSTTYGYPSGSAWHYTNGGKENEKGE
Ga0334977_0000685_2996_3217F093870N/AMNSLPNLALMSVNEYCDFLVSRAMHLRVSPFELNMEYCFEMGAISDERYERAKWEMNARRNDSFWLERGEVVR
Ga0334977_0000685_381_635F002303N/AMDIREQNRERAIEFAKEWGYENVSNHIIDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLSMCAMNCHS
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