NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334978_0000630

Scaffold Ga0334978_0000630


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0000630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21350
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (80.65%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050326Metagenome145N
F099179Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0000630_15707_16144F099179GAGMREATKYDVPHLIEMMKAYADEAGIEALKHNQNEPQVQNLFDQMIHGRGFVLVDDNLHGFLAAYITRNFWNRYVRELHEVAWWVMPEYRNTSLGGRLWLRFNKLAQYMLDSKRVDIVCTSLMPSSPDIDYTRYKYKPLQATFFRE
Ga0334978_0000630_16141_16785F050326GAGMTALNSATITHGEFVKLTTSTTTYTFCNAAAPITVGGNTFTSLGSLLSVGAVNREIKATSIDMVIGLIGIDPTNISLVLGSNIKGSTVEIWRGFFDSNYQIITSPTTQFFKRYQGIVSNMSITEDWDENARSRTATCSISCSSFRSILENRIAGIKTNLTTWQQRYASDTSMSRVAAIAGQYFDFGAPPKSGSQSDPGSAQTQLPDPNDIRDAG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.