NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334978_0000738

Scaffold Ga0334978_0000738


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0000738 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20089
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (62.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F050326Metagenome145N
F099179Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0000738_5033_5680F050326GGAMSTAIAALSSASITHSEFVRLVTSTNTYTFCSAAASITVSGITFTGLGSLLSVGDVQRDLKATSDDMIISLIGIDPTNVSLILANNIKGSTVEIWRGFFDSNYQIITSPTTQFFKRYQGIVNSVSLSEDFDQENRSRTVSCSISCASFRTILENKISGIRTNQNTWRAIYPSDSSMDRVDAITGQYFDFGAPPQSGGLSDPNAGSFVYEQDTSGI
Ga0334978_0000738_5677_6114F099179AGGAMRYATKYDMPHLLEMMREYAKEAGVKALQEKQNEDQVKNLFDQMMNGRGFVLVDDNLRGFLAAYVSRNFWNRYIRELHEVAWWVMPEYRSTSVGGRLWLRFNQLAQNLLDQKKIDIVCTSLMPSSPEIDYTKYKYRPLQATFFRE
Ga0334978_0000738_9667_10149F001991GAGGVAVFSKNTLTQVSGFDNQIIAGELVYNQRTYWNLTLNNSDGTPRNLFGSTVTSQILRRQLSNVRDSRYGLTFDIADYTPEPSPVNLTITNQDLSNGSFTLVIDESAWSVMSTDVQLDINANNPVGFSGNIKIAIPASGSTPAQDLIIFLLFLVRSDGVTN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.