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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033979 Open in IMG/M |
| Scaffold ID | Ga0334978_0000766 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19836 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (32.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001272 | Metagenome / Metatranscriptome | 733 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F082111 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334978_0000766_11828_11992 | F001272 | N/A | MITIQLTTEQVNNLLQLIDISIKAGGFQNAKVGVPLADLILEAAKSSQQIEIAK |
| Ga0334978_0000766_15539_16786 | F005388 | N/A | MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQATSELTQEMLDVAAATLIRNGATNPDSSGFISFSSDGPVFPLYIGMEASQRIAQNNAALREDLRFADMGSGPGAELLKRIGANRVIKNFRHIPNLFPPRFSYAGGKYTLIQPFTSSSGTKGTVFSVNPSWTTALYEGAFIPTPYVIKSHIVRPVNRVGDLSWQPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHAVEPVFTNQGMTIIFRRCTGALSQIICS |
| Ga0334978_0000766_17685_18128 | F000922 | N/A | MTKAQWERAKAQYLSGREWQAIADDLSVPINTLRSRACREGVTKVKAQMQTICTEKKTQTLESLSALVRSKLAADAASTLERIDSYNLDGIKDESTREQILGSVAKRSALVFGWSETGEQASVSINLLGQMPDRTPVEVVVSEPPDK |
| Ga0334978_0000766_9784_10953 | F082111 | N/A | MDEPLNSPLTNPASQPDFGNSILDAFNRMGAEADEGVSTPVTEEPKPAKKAATPAAETTKPASKSEKDIERLFGSSKKQAAEAPTSTDADSDIPETIKSTKAADAFRKIKEEKAQLAKQLDELKAGKSTNPQFESQLKTLQEERDALSERVRLLDIERHPEFVKKYEGKINSVFESVKGLVGTDGERLVGLLKSPESDYRNSQIDDIVEGLSPSKKAKLGALIVRYDEINSEKAAEMSEAKSDYDAIISKYQQDNEQGTKAALESASKTWAKVSENARALEIFEPREGDEEWNGELNQRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYSQVEVNKRLQAELAKYRGSEPGVSSKATNPGFKSANVNNAKSEDFVASVLKSLGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |