NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0000932

Scaffold Ga0334978_0000932


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0000932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17946
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.59%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048952Metagenome / Metatranscriptome147N
F057319Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0000932_11151_11810F057319N/AMELKQHQAKIAKLPYRCYSLRSAAGKRLISANAANQPSKLPAIIAALEDMPPGEYVIRCSNGSKDGYDYPINTATPGTNAPATNVSFSQASADDLKTAERLGRLESENAYLRQQLAEAGERIQALEAEALEEDWNDEADDILGDPAPSPKEQILEAIAPIIPALADKALALVDRFLNKPAAQPLSERAPAPAAPVIDYELLANMVSQKLMEAQEPEEIS
Ga0334978_0000932_2069_2728F057319N/AMNLKEHQAKIQKLPYKCFSLRSAEGKRLISANTDTQPSKLPAIIAALEDMPPDSYVIRCSNNSKDGYDYPIVTQPTNAPAPNVLTSQASADDLKTAERLGRLESENAFLRQQLAEAGERIQALEADALEALAEDPDEDDFLAEQPPSAKEQLLEAIAPVIPALADRALDLVDKFLNKPSAQPLAEAPRPAAPVIDYERLANMVSQKLMEAQQYDDEPVS
Ga0334978_0000932_857_1384F048952AGGAMTRPGNKSDIGTIAAIGGVILFWPLIKSLVNLTTATAQATANVLTPTDQLLAQAAPGIYTELMKRPPLPLPSGGMPTLRRFLSDQECGALANMIEENLGGTSSDWETIRETFRGLTLSVSDQRMIYAQFGFRREWWAVAGGGKKNLFQWFRDNLTPSELSIARQIWRSANIVPAL
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