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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033979 Open in IMG/M |
| Scaffold ID | Ga0334978_0001353 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14486 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F001872 | Metagenome / Metatranscriptome | 623 | Y |
| F003964 | Metagenome | 459 | Y |
| F009743 | Metagenome / Metatranscriptome | 313 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334978_0001353_3144_3584 | F001872 | AGCAGG | MNEFIKQLIHHSGGALWNNGSYGQRDMKGKPGSLSVHATGRAVDMSYRGSARHPQASRKSALPFVEKLCANANELGIQMVIDYFPAPHGRAWRCDRQAWSKYSKPTVSGAPGGDWFHIEISPQAADSVIFVKAAFLKVFGEIPPKA |
| Ga0334978_0001353_7822_8334 | F003964 | GGAG | VAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKKIVQPVIDDANKLVPTGVPLSGMARNWQTKSGFQILPWIPGMKQKIAAKINTRAIKEYGGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMDEANRETA |
| Ga0334978_0001353_8446_8745 | F009743 | AGGAG | MKIKLQLKRTTDSALEYYYTNLFVVTEWERLERRNIQQLSTNPLYSDYCCWMHTILKLKGEQVGDNWREWISKNPELEIIPVLDETDPNPTDAAPTAAN |
| Ga0334978_0001353_9610_10242 | F001326 | GGAG | MATYTVTNKYLIDDFAVLQLLTPSEIAVGQSITVAGVDATFNGTYSVRALPQYLFIGVDTEGDLLYDYQMPVADQVLYAKVANNVERTAASGTVSYDPVCTWVTAAQVATYLGINIPNPSDDYTLLTQSVSAGNQFAYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIESTYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |