NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0002398

Scaffold Ga0334978_0002398


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0002398 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10712
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F011208Metagenome293N
F019450Metagenome / Metatranscriptome229Y
F037193Metagenome / Metatranscriptome168Y
F057977Metagenome / Metatranscriptome135N
F102823Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0002398_1062_1256F002826GGAMNVEAKNRLKWARDMLAIAREKLVLERNRATHGRSVDMIQIITMVDAASLVCKEVVGGEDENKG
Ga0334978_0002398_1240_1428F037193AGGAGGMKTKDELAMQVRKEWDEQGYRWRLWVEAGGFRSEIFCYEWNENEYSKCVRELVDHAYQMQSV
Ga0334978_0002398_1697_1831F102823AGGMSALYDWIIVGAGLAIGRLLVAIAVITVVTAILAVFFIWEERSK
Ga0334978_0002398_5954_6121F057977N/AMNANCSFEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDVWDQDEVDDES
Ga0334978_0002398_6621_6824F011208GGAMGFEMNEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYARVSKAQRERWDRFRRERQQTEAQASKR
Ga0334978_0002398_8328_8477F019450AGGAGMANTKHSYAVYNSVGQFFARFTSYARALRWAQREGMEWSAIIRKEREIQ
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