NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0011630

Scaffold Ga0334978_0011630


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0011630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4671
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F003377Metagenome / Metatranscriptome490Y
F012767Metagenome277Y
F060645Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0011630_1282_1596F012767GGAMTHMPMRALCDRHSVTRDQVIRLRDLWNLPLRNDRRLRWKPKRSEIRDPTPREIEQACKEIQAQWDERTRELRHVIKPQAVTLKRIEMTDEAWEAFEGLDDGTP
Ga0334978_0011630_1850_2149F002540AGGAGMENYGATPAEMTQYGNLNLWQSIMLLQRWSPLIGYGQRFVNEVDPYRKSLIVGEAAEWLASQTKAQADDQLVRLLADLLKTPQGEAIVRWILLQVEAVR
Ga0334978_0011630_3678_3929F060645GGGGGMRFLLAFLVVMVGCVATLPGDSSVTADLAAETARMVVQMRQEIPPTPAPPSDGKCKNCEGRGYVGDGRVKVKCQPCDGTGKAK
Ga0334978_0011630_4269_4499F003377GAGMTDAAKETVFDILNKWGFPTLVALAAGWVLRHDVLLPLVEEHRAFVKQLGETQREISKAITEQTRLLYAMQPKAEK
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