NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0061395

Scaffold Ga0334978_0061395


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0061395 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1937
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037113Metagenome / Metatranscriptome168Y
F051794Metagenome143N
F052570Metagenome / Metatranscriptome142N
F078660Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0061395_1465_1869F052570GGAGGMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYEGREYRVVCVGEMRILYKGQIIRYCDDLIRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIVDEELVNA
Ga0334978_0061395_1_270F051794GGAGGMKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTSRSEQANGD
Ga0334978_0061395_340_567F078660AGGAGGMKPVNFYEVMDHKTEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSERGRG
Ga0334978_0061395_727_870F037113AGGAGGVNKGWTVWVGGSEINWKHYTHKIDAERIAEFWREVKGYDDVRVEEIA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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