NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0000181

Scaffold Ga0334981_0000181


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0000181 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55780
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (82.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029722Metagenome / Metatranscriptome187Y
F034912Metagenome / Metatranscriptome173N
F082573Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0000181_34007_34273F034912N/AMKHNLPIVKVVWEDACHDTLGWGDSPEKAKDFQVPLVVSIGFLLGETKQGVKICQSLTDDAIAQSLVIPRKMIQSIERGAWREKKGRR
Ga0334981_0000181_36091_36327F029722AGGAVASWINLIKQVKSSDVEEIAAAYEKALPFVVQDWAKMILKLAKSKRLPIIEKIDKVHGDKIGQMVRDEVTAQHKRPKT
Ga0334981_0000181_43077_43391F082573AGGMTDVEIQRMAHNLGLVHHTDQVKVLVRQILRKHKPLTKTEKIYFNHLTQPYSLIELSEHFGCTTEGARKHLKVLMSKGLIERESRYRWTEGRHGAWAWYYRRKP
Ga0334981_0000181_6599_6913F082573AGGMNGAEIQRMAHNLGLVHHTDQVKVLVRQILRKHKPLTKTEKMYLNYLTQPYSLNDLSAHFGCTTEGARKHLKVLMSKGLIERESRYRWTEGRHGAWAWYYRRKV
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