NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001210

Scaffold Ga0334982_0001210


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001210 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16196
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (73.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001210_3117_3731F007029AGGAGMGFLDNYEDVNARIKRFRSEFPSGRLVAYIESFDIEKGTILVRAEAYREYEDTVPSAVDYAFGNVATYPQNMRKWMVEDTITSAYGRVIGLLTPSLEHNSRPTVQDMEKVETLPASADPWSTKASIEDMATMASAVLEIGKELGGELVPAAPRCPHGTMIWAEGTAKATGKPWAAYKCTEKNRANQCNPYWQVLGSDGKWKPQV
Ga0334982_0001210_3907_4413F029049N/AVSRLAKVILDRTQEITAHQKGLERAIAINADPSDTNQFGQQFTNYHEFIWQKAEACGAETAVANYFGDYSFIPKVNTFHDEADVGANVEVKWTKHATGHLIIQNRPNPRPNDVAILVTGWSPVYVLLGWMPVHMAMVPKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
Ga0334982_0001210_4403_4558F030767GAGGMAYKTKCRLCGKITDHIERVITDNLPPYVKSLQCVKCGVMGIVMMEDVKDV
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