NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0004016

Scaffold Ga0334982_0004016


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0004016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9061
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000888Metagenome / Metatranscriptome847Y
F028783Metagenome190Y
F034555Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0004016_2355_2828F028783N/AMTRPYTAFKAPVAKGPLQGMDEFIRQVVKRSGGSLWNNGSWVVRDIRTKPGQLSNHARGLAADLSYRKMTDKGIADGRKIALPFIYKLLENADTLQIELVIDYAENRSWKCDRGTWLKGKWSGGDWFHVEVSLAMASNENLVKQAFNDVFKDMPKTV
Ga0334982_0004016_3238_3474F000888AGGMVAQYFAQINENNVVINVHVVTAEFMAQNPERYPGIWVETFFNTPGKTYAGINYTYDETTKDFTPPYIEPIETDDDEQ
Ga0334982_0004016_7954_8550F034555N/AMSNPKLVLQVEGIKETLAELNKYDKVYRRQVTKDIKGAGAPIIATARQLIGDVPPLSGMVRGKLIKGREVYWTNKTAKAGLKIKVGRRASKGGTVQFKDKFDAENNPRESHSVTFKARPYQLMVAQQMDAAGAIYDHAGIKTKNTNFVNNLNVEVGSQPRAIDPAVQQHRETVQFAVKQIVDEVAKTLNKKLKVRYGN
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