NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0004193

Scaffold Ga0334982_0004193


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0004193 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8871
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050992Metagenome144N
F062576Metagenome130N
F102810Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0004193_3331_3534F050992AGGMTEEIKQSLLNWESMGKNYSPNFNYTELNEIAIKSGNKPFNLGCSECRRQLLEYLLATIKDGTSKQS
Ga0334982_0004193_8467_8871F102810N/AAVLIIIEKKFDLTEIRNLKHFFSAVVWRTWHSNKFRKKYFVDHVKFVDNLNEIIEEKENIDYSVLINFLESSPQNETEFYEVNLLRLYILHGDAKKLSNKTKIPYRTVANDIKLIKDKLKRQHNEKNSDKGEYE
Ga0334982_0004193_966_1580F062576AGGMMTIELPNSWHDISIEKFPLIYDITRDKDIDPIDREIRVISILTGITVAEVEKIRIDQLKELIKSVNFIFKMEFPNSVEMFKHNGYRWVVNYDITKLSAGDFISLSKLTESEESIIGNLPQLVAMFVKPYKLKWFKLKEVEMDYAEKVEHIKSINVGIVYPLCVFFCKVIEGLYPHIEDYLVKQMNEARMTMESELNELKNKNT
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