NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0011609

Scaffold Ga0334982_0011609


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0011609 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5219
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F043286Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0011609_220_399F035668AGGVNIFSKDYKAGVLKGRTDEAARTADALIELERAEIISNAQMQAIFDLVLEKLTDAVDID
Ga0334982_0011609_2602_2907F011142AGAAGMAVVKVSGKVSKVFGASNQGLSLVESYKSATGEDYTRTYTVWFAVAHGVAEGAEVTVYGQLSTKIEDYEDRNGQPARKVKLDINNAQIDAPPAPPVTNAPF
Ga0334982_0011609_2978_3250F043286AGGAGMLQDNQVECCRCGFKWVVNAEKRGRKDLKCISCRVKPATTIQYGKLRCTPHQGSLDADLNPVDDKGRIVLPGVRVCGHRDCVNPTHIVSD
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