NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0021084

Scaffold Ga0334982_0021084


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0021084 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3792
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F006139Metagenome / Metatranscriptome380Y
F033005Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0021084_1503_1901F002421AGGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDVWKHLGDEFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGQHDHAQRLSVWAGI
Ga0334982_0021084_1922_2185F002794GGAGMSEGSAWNQGELTEDTRRMVLEQAMNTNHTMTIFGLMDEIMAVSTNPHASIIQRLKGMKNSLSLEDPMPLHDVTTLDLAIKALQAHS
Ga0334982_0021084_1_285F033005AGGMTRKLTEHDTQIYKQARAELLRDSPICHWCKRNTATELDHLVESDKGGTIEDGYVASCKPCNSARGATYRNKKLANAKQNREKAINDFLYSDLMP
Ga0334982_0021084_2902_3447F001872N/AMQASGVAIAKAKEGVPNARDYIGNADGASPAPRAGMNEWIKQAIAASNGTLWNNGSWGQRDMRGKPGSLSVHATGRAVDLSYRKSEKHPKAGRKEALVFIDKLVANANDLGLQCILDYFPQEHGRAWRCDRQAWLKYTKETIHGAPGGDWFHIEITPQAADSVIWVKAAFLKVFGEIPPK
Ga0334982_0021084_3597_3761F006139GGAMDAQIVVALVGGGFAVLVALISKIGSDNKKDHGQVHQTLGRIEEKIDNHVENHS
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