NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0028182

Scaffold Ga0334982_0028182


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0028182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3219
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F002099Metagenome / Metatranscriptome593Y
F046906Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0028182_1065_1328F046906N/AMFMYDQKTDSQNKETSDRSERKANPLGDTNGKRNAVHLCIGYGGQLYAWPLGKRSGQRRDIQDDFTRFFYTYRRHDWLPEWYQADAK
Ga0334982_0028182_1315_1551F001538GGAGMIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKKKQTELQDLAFEIYTKKVVQEKLRMEIFTNRKLDVYV
Ga0334982_0028182_1548_1847F002099N/ALGDAVRWLIALVLILSLQSTGKDLCSVREFYSIAWGIHDPTERHRLMVEWLTKHQQLCKSTDFKVIWNNLAEWAGSADSHHLRALVVHGYKEALEREKK
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