NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0168974

Scaffold Ga0334982_0168974


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0168974 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019647Metagenome / Metatranscriptome228N
F045094Metagenome / Metatranscriptome153N
F077299Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0168974_452_676F045094N/AMDDYHIKGTTEEDVDKAINKIFRYELLDDAQQVLFNEIMTEALDVPWIAEQLTDVWDRYEQEILDCKKEDYENR
Ga0334982_0168974_4_327F077299N/AMEQRGKAEREKLYAEFPTMIKEFTGKTFDDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0334982_0168974_663_1067F019647AGAAGMKIVKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEAQTPAAQPEQSDKPDLAAMVFELSAIYSQAYIDIYNKISEAGIPHENATAATSTIFIQVFQKLR
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