Basic Information | |
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Taxon OID | 3300033983 Open in IMG/M |
Scaffold ID | Ga0371488_0024964 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4235 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: McLean, Ithaca, New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003186 | Metagenome / Metatranscriptome | 502 | N |
F021908 | Metagenome / Metatranscriptome | 216 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0371488_0024964_3338_3622 | F021908 | N/A | VQTELDACPACGADWKAIDVSHGPGCPKNLLEEAMDTPNGALVRRCFRILNAKSIGLTITLADITEEEFRVLELIEAERQDQIKNGDSGNGSSR |
Ga0371488_0024964_910_1413 | F003186 | GAG | VINPKTILGEWVTALQSCPDLVDGLGGDGDNIRAFMEGLATDNNLRLAILQMPPGSILVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQDSTATYSDLFWLLVSAKPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE |
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