NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371488_0128560

Scaffold Ga0371488_0128560


Overview

Basic Information
Taxon OID3300033983 Open in IMG/M
Scaffold IDGa0371488_0128560 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1358
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F083098Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0371488_0128560_3_563F083098GAGMEDGINPDRKKQSQSFRWLHEIDQILVVGMKYGPTGTQEAVKRVRQLTPELVPAQVWHRMRHLREKERGKSAAPVDWSESAIEILREGYRSGGRKKTEAIKIVRALHPGVAGYVVSRFARSQGWLDKQQADKRKGDRRPWTSEEEQELFARAGYEPVKAIAEKLKRSEQSVRFRLKGRAISARVTDG
Ga0371488_0128560_778_1356F005865GAGGMPAPEPGPEWVLSGANPRLDSATESELSKAAQSAWPKALAHVRQVQSRNPFDDDGILVAEVWESVLQSVSRTLDRMNGRRGEIGDLEAYLLGSFYHRLRRALKKEQRREETIHLVSSAQELEVLGKTSQAEQHDIEGTLHAQEILDRMDDWSRKVWIAREYGYTWKHIGRVLGVPGDSVMLRFRRRMKILRAR
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