NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334909_000131

Scaffold Ga0334909_000131


Overview

Basic Information
Taxon OID3300033988 Open in IMG/M
Scaffold IDGa0334909_000131 Open in IMG/M
Source Dataset NameSoil microbial communities from Mojave Desert, California, United States - 5NOC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17826
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0334909_000131_15655_16137F006886N/AMYQDLDTSKFGSELDYLNSEITQQFEQQNQVQKTDEISGIERFWNLTGNLGEFGAYFSAGLTASLIIRAIPALIPAAVILVPGIGIGLAVYTFCADSRLAKRNSFLILLALATALIAGNWDAWQAWIIANSQILIFSFAIIVITVGFVAAQVWGKLNNAR
Ga0334909_000131_16177_16839F005661AGGAGMQFRVAQTSGAAHVAREFDYHSGPLTPELVNEAARKAKILDLQKQLRTAYNRHDAKIRANKVEIERLTAEAIESGLTDVAQIDKYVSKAIVAGAKYDQHVVNLTQKLQHELGLVKVQGASTQTLENISFRQQLLLIRANHQAKGQIQQNGFQQTLKEIQASPQKAVAMQQKRSAFNNYINAKDFDPIPAVPGVSAGGNNSSMSNGKGFLGSLFDYFTGRN
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