NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0000160

Scaffold Ga0334992_0000160


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000160 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58591
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (64.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020169Metagenome225Y
F044489Metagenome154Y
F064393Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000160_40900_41130F020169N/AMSVIVKIHWSREFENEKMWNEVCIWAIEYFGLPGDRFETRANVNYMEFIFKSRKDALLMSLRWNAELLEPADFETV
Ga0334992_0000160_46868_47197F044489AGGAGGMNAEYTLTQLKLWCINQSKDEQIWFNKDTTYQWTRGKDTATGLINGVVRKLAGIDPAGKQIWVVAGSLKIAPNGQVLRFTGIPSKVQKSFEPHASNTANPIDFPQTELA
Ga0334992_0000160_5945_6091F064393AGGAGMSKYEAWWDSLPQSTKIYLKSQPIWHDSDMWRAGMFGLVVGFILGVIL
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