Scaffold Ga0334992

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0000392 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033992 Open in IMG/M

Scaffold ID

Ga0334992_0000392 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36523
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (33.93%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36523

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (33.93%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000392_13656_15251	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDAISNTQPGAFACKAGLPAIAFSWVGTGYSVLRVTDTAAAAITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATQGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSAQDYNSADPVCPSVIQFTAVINDADPARYVIGTTGILCDGNIVANAGISAASVAALIIALQAAWDAEFGAGQGTWSVVSGTLIQLAGSSCTNVTLEFAI
Ga0334992_0000392_1899_2093	F013755	N/A	MEGVEMSDTPISDSTPHNVAELGMLCRRLERLAAVRLAYIEQLETENDAMRADLLLWSEKEVKP
Ga0334992_0000392_2090_2290	F001259	AGGAGG	VKDSPAFIYVHAFNGLVRVESLETARNIDGNPEWKHVSTVNPYVALEQILRAKGKDRNLIIKHLLA
Ga0334992_0000392_25205_27244	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTQLLTFDDPSVLYNGGYYNAAVQSGFKEGQFQGCGTYVSDNGDPYIFASISGKVFKIDIENKFKVTDLSAIASQFVVFTRGRVANVATYVTGGAHGLFPGMVVRLPEVPGATSPAGFFGDFIVQNIPTFDSFTTYSPGADVGPFLGPAFFGYLLSTNNPSAAHVYFQQAENWLIIQDQQNAPYLYDGTSLRRALSDEVPVGGPMAYGKGRLWVASGSEYYGGDLVYGDPAYGRDSVIRFTENTFINEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLTAASAVNFDNRMLMTIQPQKVNGRGTVHRGVVALDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTIRIQKQEHCFMFGLNQGDIGLFEVTKNGQFDFDGYDDAPIEWTIETRSITFGEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWHPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE
Ga0334992_0000392_31345_32433	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYLRVTPQLAADAGKRVLLQGLDFNGIPIRTLDSVTGEYVWGEYVTLPNPSISAYVQTSKLFKQPGLTGAQKPLTQGSLTILAYNPTTLLQTEVAVWGPSEQNPEYRRTYLVGMPEVCGGANSCSTTQDNCCIDNGDGCVPADEACTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQFRFGGFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334992_0000392

Overview

Ecosystem & Geography

Associated Families

Sequences