NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0000438

Scaffold Ga0334992_0000438


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000438 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34698
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006142Metagenome / Metatranscriptome380Y
F097351Metagenome104Y
F103254Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000438_5492_5977F103254N/AMKIKPIKTLYDYNQAQKYLESIFHKELTEDESNDVAILEILMEEFERKGKVSKEDLVIEPLIDYVFDLVSNASQYEEEGILERGLKLGEEYGELSAEILKLAGYKRSLETKEQINYNILLESTDCLIMIFDIMTQMGFTKEQICNMSEKQVNKWLTNIEIK
Ga0334992_0000438_9159_9467F097351N/ALIGFKKERKQSKDYLMLIGKKSDSLIEPGYVYAPYIPMTTSQVIVDYGSKNISRKRKINNIFDLGLDVKDEFSPSKSIMSRYSKKTINAKYYGTIEIKNPTY
Ga0334992_0000438_9909_10595F006142N/AMKRKNKLILEFTEFNMQRMNPDSAAGAIGGVDDPSLSTNAFDKHADAIRQAMSRVNDILYNLAGTSAYKNLRSKLGLESQDIQKMKILRIVKSNSIFYDAYITFVIDDYEYWGVIENVMSANPEFTSEVFKDFDLYQSKEWIIKIKGLIIKTIKSWLKPEPGMYKLLNDELYCYSTETGKQLRMEKGIEIELIRAHDNKMVVKYETDYYNLVGDNYVYFNWWFEKIED
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