NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0000707

Scaffold Ga0334992_0000707


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000707 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27011
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (11.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004953Metagenome / Metatranscriptome417Y
F071153Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000707_18863_19216F071153N/AMHTGKFIKKDGKLVFAHPQDKLAYEIFVEKLKEGDKVDMFIEVSNPDHSKAQLAKVHACIRELAKESGYTFEEMKLVVKEHAGLAGKSFGDCSKSDLMLAIEACIQIGSENYNINLH
Ga0334992_0000707_5077_5436F004953N/AMSEKSMMLVEATWQDKKTFRLIPVVESCPYVECIFDPETKVFVVISKIRKTSLHMLPKLDDYGQPIAGAKGMKQERHKIEVFQEFYVEDATAIEELIKLVSVNPKFDYKKFMTPAATEA
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