NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0002415

Scaffold Ga0334992_0002415


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0002415 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14216
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024059Metagenome / Metatranscriptome207Y
F077042Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0002415_12410_13048F077042N/AMNPKVITAALAAVVVCFSGVGVLTVKSVSKHIAASDKEFAMTSNVLSPLFDIYGLAIVDGQAKASKGLIDAKEFCDSLAKLQAEAERLLAEFGNPTELVAQHKLVAAYLKKARSACDKGEVATLNSPAMTAELYAVIEPMTALINKALHEELTISRTHKEAADRALLTFERFASVAAGLGMVFAVAPWIKSKEKPVVVRRPKTRRNKTEGKP
Ga0334992_0002415_8270_8560F024059N/AMQVIAANGALHRNLTVNSTATNFIVAALTADATHVYWSLEGCDARMSIDGVAPTTSDGHIIKDGNSGIWSRSWAQSAKVISISGAGKFTISELNHF
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