NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0004060

Scaffold Ga0334992_0004060


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0004060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10761
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F058788Metagenome / Metatranscriptome134Y
F068428Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0004060_3720_3944F068428GGAMLEDLQIPVRITTCRVRTLRDELSDKDSAILEAAVMNPEWACKTLSNELLKRDIKISDTAIKHHREKRCSCWKI
Ga0334992_0004060_5768_5974F006985AGGMIREVCSCGAEFETDDREAITLVKSWRKTHRHSDRPQMPDAGHGSILTNTDVALGFQAIYDPLEEEID
Ga0334992_0004060_583_891F011142AGAAGMAVVKVAGKVSKVFGASNQGLSLVESYKSATGEDYTRTWSVWFAVSHNLVVDQQVTVFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVDAPKVAEPVASAPF
Ga0334992_0004060_8426_8572F058788N/AMNLLATILQASGIAVISVGVSIIFLPAGLVVAGVGILLFGLALDKGGK
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