NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0004784

Scaffold Ga0334992_0004784


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0004784 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9776
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018705Metagenome / Metatranscriptome233Y
F040085Metagenome162Y
F046898Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0004784_5111_5305F018705N/AMDNKLKPFLMRLHPATRALLDTAAADQRRSVSSLIDQCVRDQLMPKYGELQPRLQRFLSGVRQP
Ga0334992_0004784_7285_7593F046898GGAGMLAPNLAAGRDMRDRQLDIFEQRDHHFLERCRALAVLICKQQGEVCINDIRAYIEVPPGVHPSVLGAVFRTKQFKRIGYTEAAHPQAHARVVRVYSLATNKE
Ga0334992_0004784_8554_8739F040085AGGAGMNLPDKPAIKQAYEQAVVALLNVTDSTEEEAEIFVDAMTDLIFTTMQAYLSQKEQNAIDH
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