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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0004871 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9675 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (67.86%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007525 | Metagenome / Metatranscriptome | 349 | Y |
| F008496 | Metagenome / Metatranscriptome | 332 | Y |
| F032881 | Metagenome / Metatranscriptome | 179 | Y |
| F070119 | Metagenome | 123 | N |
| F071246 | Metagenome | 122 | N |
| F072347 | Metagenome | 121 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0004871_1107_1295 | F032881 | GGA | MSSTLELVVQELQNRIGQLVSQYETQIAILKAQASEAIQAKDDEIKQLKNGSLHVESTKKEK |
| Ga0334992_0004871_4117_4368 | F072347 | AGGA | MDNRTKAEILVQFTQDEFNSGEYDDFFDYNDLGIPMSIAVTQDMVILTDSGEQLLEETWIELCNLFEADPNGEYESIDDLTTQ |
| Ga0334992_0004871_4358_4600 | F071246 | GGA | MGKSQTESVADKIVALLADGRISQAQWRLWIPRRITEHNKMIIANAKNLADGINEIIADEQITLSKELIFDYQTGHDNGQ |
| Ga0334992_0004871_4889_5101 | F070119 | GGAGG | MNLNSYSAFDFVIPNCLEPGDIIEWQEEIYTVKSFDLLSDGFIIYAVDEMEEDVELLIPDNTVLSLMEEQ |
| Ga0334992_0004871_5243_5674 | F007525 | AGTAGG | MKTYEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRVVDIERNGEMYLCVLDLLEDGTISEDETVIRYSDDLEAAGITDDIQLMQYIKTMGNAGYETIHQNPWWEVFAHNEDMGEVYDTFYEAIDAGIDHILDDRNW |
| Ga0334992_0004871_8339_8848 | F008496 | AGGAG | VEFTTGQPTFGTPATITPMEEQVALTPAYDPKATILVKKGYYHESPANIEYATENADDISRTYWRVGALTETNNRNSRTVDAVKEYLVENYEDIGEEHATEIANILGIDLSKTIEVVFDVTIRATISVPVGKDVDDLSVYDFDIEISSNESEYEIEESEADIDSIRNYF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |