NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0008577

Scaffold Ga0334992_0008577


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0008577 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6962
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F047578Metagenome / Metatranscriptome149Y
F060730Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0008577_1385_1654F047578N/AMICIDSSRKPSKVPIEQWIKEGEVYTVIEVVKMGLQDDKYGVLLKEVQMSADCFPYEYYDADRFIPLDLRIYELQEEQQEVQEADLELI
Ga0334992_0008577_4165_4647F000716N/AMEKLKKQVRDYQLYAGKTYVQYESDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQLTIKYSNLIFETLFPNSPMTQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPVTLPRLKNEVKA
Ga0334992_0008577_674_937F060730N/AMGRMKELYARIVYENDGQIPAEMTLADMARMKEIEIYNWEEYEREQEKIRLFRVKQENSREITKVAQIREYWEEELRQGKNRRPKKN
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